libpappsomspp
Library for mass spectrometry
Public Member Functions | Public Attributes | List of all members
pappso::TimsXicStructure Struct Reference

structure needed to extract XIC from Tims data More...

#include <timsdata.h>

Public Member Functions

 TimsXicStructure ()
 

Public Attributes

std::size_t precursorId
 the corresponding precursor id More...
 
MzRange mzRange
 mass range to extract More...
 
std::size_t scanNumBegin
 mobility index begin More...
 
std::size_t scanNumEnd
 mobility index end More...
 
pappso::pappso_double rtTarget
 targeted retention time for this precursor More...
 
XicSPtr xicSptr = nullptr
 extracted xic More...
 
unsigned int charge
 targeted charge for this precursor More...
 

Detailed Description

structure needed to extract XIC from Tims data

Definition at line 48 of file timsdata.h.

Constructor & Destructor Documentation

◆ TimsXicStructure()

pappso::TimsXicStructure::TimsXicStructure ( )
inline

Definition at line 50 of file timsdata.h.

51  : mzRange(pappso_double(1), PrecisionFactory::getPpmInstance(10.0)){};
pappso::PrecisionFactory::getPpmInstance
static PrecisionPtr getPpmInstance(pappso_double value)
get a ppm precision pointer
Definition: precision.cpp:149
pappso::pappso_double
double pappso_double
A type definition for doubles.
Definition: types.h:48
pappso::TimsXicStructure::mzRange
MzRange mzRange
mass range to extract
Definition: timsdata.h:58

Member Data Documentation

◆ charge

unsigned int pappso::TimsXicStructure::charge

targeted charge for this precursor

Definition at line 78 of file timsdata.h.

◆ mzRange

MzRange pappso::TimsXicStructure::mzRange

mass range to extract

Definition at line 58 of file timsdata.h.

Referenced by pappso::TimsFrame::XicComputeStructure::XicComputeStructure(), pappso::TimsData::extractXicListByPrecursorIds(), and pappso::TimsData::getTimsXicStructureFromPrecursorId().

◆ precursorId

std::size_t pappso::TimsXicStructure::precursorId

the corresponding precursor id

Definition at line 54 of file timsdata.h.

Referenced by pappso::TimsData::extractXicListByPrecursorIds(), and pappso::TimsData::getTimsXicStructureFromPrecursorId().

◆ rtTarget

pappso::pappso_double pappso::TimsXicStructure::rtTarget

targeted retention time for this precursor

Definition at line 69 of file timsdata.h.

Referenced by pappso::TimsData::extractXicListByPrecursorIds(), and pappso::TimsData::getTimsXicStructureFromPrecursorId().

◆ scanNumBegin

std::size_t pappso::TimsXicStructure::scanNumBegin

mobility index begin

Definition at line 61 of file timsdata.h.

Referenced by pappso::TimsFrame::XicComputeStructure::XicComputeStructure(), pappso::TimsData::extractXicListByPrecursorIds(), and pappso::TimsData::getTimsXicStructureFromPrecursorId().

◆ scanNumEnd

std::size_t pappso::TimsXicStructure::scanNumEnd

mobility index end

Definition at line 65 of file timsdata.h.

Referenced by pappso::TimsFrame::XicComputeStructure::XicComputeStructure(), pappso::TimsData::extractXicListByPrecursorIds(), and pappso::TimsData::getTimsXicStructureFromPrecursorId().

◆ xicSptr

XicSPtr pappso::TimsXicStructure::xicSptr = nullptr

extracted xic

Definition at line 73 of file timsdata.h.

Referenced by pappso::TimsFrame::XicComputeStructure::XicComputeStructure(), pappso::TimsData::extractXicListByPrecursorIds(), and pappso::TimsData::getTimsXicStructureFromPrecursorId().

The documentation for this struct was generated from the following file: