GenotypeReader.VariantIterator (picard 2.8.1 API)

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java.lang.Object
- picard.fingerprint.GenotypeReader.VariantIterator

All Implemented Interfaces:

htsjdk.samtools.util.CloseableIterator<htsjdk.variant.variantcontext.VariantContext>, Closeable, AutoCloseable, Iterator<htsjdk.variant.variantcontext.VariantContext>

Enclosing class:

GenotypeReader
```
public abstract static class GenotypeReader.VariantIterator
extends Object
implements htsjdk.samtools.util.CloseableIterator<htsjdk.variant.variantcontext.VariantContext>
```
Small class to encapsulate an iterator over variants, optionally with a sequence dictionary.

- Constructor Summary
  
  Constructors
  Modifier Constructor Description
  
  protected VariantIterator(htsjdk.samtools.SAMSequenceDictionary dictionary, Object header)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  Object getHeader()
  
  htsjdk.samtools.SAMSequenceDictionary getSequenceDictionary()
  - Methods inherited from interface htsjdk.samtools.util.CloseableIterator
    close, stream, toList
  - Methods inherited from interface java.util.Iterator
    forEachRemaining, hasNext, next, remove
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VariantIterator

protected VariantIterator(htsjdk.samtools.SAMSequenceDictionary dictionary,
                          Object header)

Method Detail

getSequenceDictionary

public htsjdk.samtools.SAMSequenceDictionary getSequenceDictionary()

getHeader
```
public Object getHeader()
```

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